Scientific Literature Supporting the SFI Approached

Peer-Reviewed Journal Articles

1. Ames, R.N., E.R. Ingham and C.P.P. Reid. (1982). Ultraviolet-induced auto fluorescence of arbuscular mycorrhizal root infections: An alternative to clearing and staining methods for assessing infections. Can. Jr. Microbiol. 28:351-355.

  1. Ingham, E.R. and D.A. Klein. (1982). Relationship between fluoresces in diacetate-stained hyphae and oxygen utilization, glucose utilization and biomass of submerged fungal batch cultures. Appl. Environ.Microbiol. 28:351-355.
  2. McClellan, J.F., D.C. Coleman, K.A. Horton and E.R. Ingham. (1982). The effect of chloroform on protozoa and other soil inhabitants. J. Protozool. 29:491.
  3. Ingham, E.R. and D.A. Klein. (1984). Soil fungi: Relationships between hyphal activity and staining with fluoresce in diacetate. Soil Biol. Biochem. 16:273-278.
  4. Ingham, E.R. and D.A. Klein. (1984). Soil fungi: Measurement of hyphal length. Soil Biol. Biochem. 16:279-280.
  5. Ames, R.N., C.P.P. Reid and E.R. Ingham. (1984). Rhizosphere bacterial population responses to root colonization by a vesicular-arbuscular mycorrhizal fungus. New Phytol. 96:555-563.
  6. Ingham, E.R. and D.A. Klein. (1984). Phosphatase activity of Penicillium Itrinum submerged batch cultures and its relationship to fungal activity. Plant and Soil. 81:61-68.
  7. Ingham, E.R. and D.C. Coleman. (1984). Effects of streptomycin, cycloheximide, fungizone, captan, carbofuran, cygon and PCNB on soil microbe populations and nutrient cycling. Microbial Ecology 10:345- 358.
  8. Ingham, R.E., J.A. Trofymow, E.R. Ingham and D.C. Coleman. (1985). Interactions of bacteria, fungi and their nematode grazers: Effects on nutrient cycling and plant growth. Ecological Monographs 55:119-140.
  9. Ingham, E.R. (1985). Review of the effects of twelve selected biocides on target and non-target soil organisms. Crop Protection 4:3032.
  10. Ingham, E.R., D.A. Klein and M.J. Trlica. (1985). Responses of microbial components of the rhizosphere to plant management strategies in semiarid rangeland. Plant and Soil 85:65-76.
  11. Ingham, E.R., C. Cambardella and D.C. Coleman. (1986). Manipulation of bacteria, fungi and protozoa by biocides in lodgepole pine forest soil microcosms: Effects on organism interactions and nitrogen mineralization. Can. J. Soil Sci. 66:261-272.
  12. Frey, J.S., J.F. McCellan, E.R. Ingham and D.C. Coleman. (1986). Filter-out grazers (FOG): A filtration experiment for separating protozoan grazers in soil. Biol. Fert. Soil 1:73-79.
  13. Ingham, E.R., J.A. Trofymow, R.N. Ames, H.W. Hunt, C.R. Morley, J.C. Moore and D.C. Coleman. (1986). Trophic interactions and nitrogen cycling in a semiarid grassland soil. Part I. Seasonal dynamics of the natural populations, their interactions and effects on nitrogen cycling. J. Applied Ecology 23:597-614.
  14. Ingham, E.R., J.A. Trofymow, R.N. Ames, H.W. Hunt, C.R. Morley, J.C. Moore and D.C. Coleman. (1986). Trophic interactions and nitrogen cycling in a semiarid grassland soil. Part II. System responses to removal of different groups of soil microbes or fauna. J. Applied Ecology 23:615-630.
  15. Hunt, H.W., D.C. Coleman, E.R. Ingham, R.E. Ingham, E.T. Elliott, J.C. Moore, C.P.P. Reid and C.R. Morley. (1987). The detrital food web in a short grass prairie. Biol. Fert. Soil 3:57-68.
  16. Moore, J.C., E.R. Ingham and D.C. Coleman. (1987). Inter- and Intraspecific feeding selectivity of Folsomia candida (Willem) (Collembola, Isotomidae) on fungi: Method development and ecological consequences. Biol. Fert. Soil 5:6-12.
  17. Ingham, E.R. and K.A. Horton. (1987). Bacterial, fungal and protozoan responses to chloroform fumigation in stored prairie soil. Soil Biol. Biochem. 19:545-550.
  18. Coleman, D.C. and E.R. Ingham. (1988). Carbon, nitrogen, phosphorus and sulfur cycling in terrestrial ecosystems. Biogeochemistry 5:3-6.
  19. Hunt, H.W., E.R. Ingham, D.C. Coleman, E.T. Elliott and C.P.P. Reid. (1988). Nitrogen limitation of decomposition and primary production in short grass, mountain meadow and lodgepole pine forest. Ecology 69:1009-1016.
  20. Carpenter, S.E., M.E. Harmon, E.R. Ingham, R.G. Kelsey, J.D. Latin and T.D. Schowalter. (1988). Early patterns of heterotroph activity in conifer logs. Proc. Roy. Soc. Edinburgh 94B:33-43.
  21. Ingham, E.R., M.V. Wilson and C.D. McIntire. (1988). Social and economic concerns with respect to the choice of critical terrestrial Ecosystems. USEPA.
  22. Cromack, K., Jr., B.L. Fichter, A.M. Moldenke and E.R. Ingham. (1989). Interactions between soil animals and ectomycorrhizal fungal mats. Agric. Ecosyst. Environ. 24:155-169.
  23. Ingham, E.R., D.C. Coleman and J.C. Moore. (1989). Analysis of food-web structure and function in a short grass prairie, a mountain meadow and lodgepole pine forest. Biol. Fertil. Soils 8:29-37.
  24. Stamatiadis, S., J.W. Doran and E.R. Ingham. (1990). Use of staining and inhibitors to separate fungal and bacterial activity in soil. Soil Biol. Biochem. 22:81-88.
  25. Coleman, D.C., E.R. Ingham and J.C. Moore. (1990). An across ecosystem analysis of seasonal effects and faunal reduction on decomposition in a semiarid prairie, meadow, and lodgepole pine forest. Pedobiologia 34:207-219.
  26. Ingham, E.R., R. Griffiths, K. Cromack and J.A. Entry. (1991). Comparison of direct versus fumigation incubation microbial biomass estimates in ectomycorrhizal mat and non-mat soils. Soil Biol. Biochem. 23:465-472.
  27. Lodge, D.J. and E.R. Ingham. (1991). A comparison of agar film techniques for estimating fungal biovolumes in litter and soil. Agric. Ecosyst. Environ. 5:31-37.
  28. Griffiths, R.P., E.R. Ingham, B.A. Caldwell, M.A. Castellano and K. Cromack, Jr. (1991). Microbial characteristics of ectomycorrhizal mat communities in Oregon and California. Biology and Fertility of Soils 11:14-20.
  29. Ingham, E.R., D.C. Coleman, R. Parmelee and D.A. Crossley. (1991). Reduction of microbial and faunal groups following application of streptomycin and captan in Georgia no-till agro ecosystems. Pedobiologia 35:297-304.
  30. Ingham, E.R. (1993). The functional significance and regulation of soil biodiversity: An executive summary of the Soil Ecology Society meeting. Soil Ecology Society Newsletter 5:2-9.
  31. Klopatek, C.C., E.G. O’Neill, D.W. Freckman, C.D. Bledsoe, D.A. Coleman, D.A. Crossley, Jr., E.R. Ingham, D. Parkinson and J.M. Klopatek. (1993). The sustainable biosphere initiative: A commentary from the U.S. Soil Ecology Society. Bulletin of the Ecological Soc. of America. 73:223-228.
  32. Colinas, C., E. Ingham and R. Molina. (1994). Population responses of target and non-target forest-soil organisms to selected biocides. Soil Biol. Biochem. 26:41-48.
  33. Ingham, E.R. 1994. Soil Organisms and Forest Health. Pages 12-15 in Headwaters Journal, Spring (1994).
  34. Ingham, E.R., D.C. Coleman, and D.A. Crossley, Jr. (1994). Use of Sulfamethoxazole-Penicillin, Oxytetracycline, Carbofuran, Carbaryl, Naphthalene and Temik to Remove Key Organism Groups in Soil in a Corn Agro ecosystem. J. Sustain. Agric. 4(3):7-30.
  35. Ingham, E.R. and H. Massicotte. (1994). Protozoan communities around conifer roots colonized by ectomycorrhizal fungi. Mycorrhiza. 5: 53-61.
  36. Ingham, E.R., J.D. Doyle and C.W. Hendricks. (1995). Assessing interactions between soil foodweb and a strain of Pseudomonas putida genetically engineered to degrade 2,4-D. Applied Soil Ecology. 2:263-274.

38 Ingham, E.R. and W.G. Thies. (1996). Soil foodweb responses in the first year following clear cutting and chloropicrin application to a mature Douglas-fir forest to control laminated root rot. Applied Soil Ecol. 3:35-47.

  1. Rygiewicz, P.T. and E.R. Ingham. (1997) Soil Biology and Ecology. IN Fairbridge, R.W. and D.E. Alexander (eds) Encyclopedia of Environmental Science. Van Nostrand Reinhold. NY.
  2. Sances, F.V. and E.R. Ingham. (1997). Conventional and organic alternatives to methyl bromide on California strawberries: Effect of Brassica residues and spent mushroom compost following successive chemical fumigation. Compost Science and Utilization. 5: 23-37.
  3. Griffiths, R.P., J.A. Entry, E.R. Ingham, and W.H. Emmingham. (1997).Chemistry  and microbial activity of forest and pasture riparian-zone soils along three Pacific Northwest streams. Plant and Soil 190:169-178.

42 Ingham, E.R. and W. Thies. (1997). Changes in rhizosphere microflora and microfauna 10 years following Douglas-fir live tree injection with chloropicrin or methylisothiocynate. Can. Jr. For Res. 27:724-731.

  1. Hendricks, C.W., M.T. Holmes and E.R. Ingham. (1998). Foodweb methodology to assess ecological effects of anthropogenic stressors in soil. Trends in Soil Science. 2:181-189.
  2. Massicote, H.B., L.E. Takaberry, E.R. Ingham, and W.G. Thies. (1998). Ectomycorrhizae establishment on Douglas-fir seedlings following chloropicrin treatment to control laminated-root rot disease: Assessment of 4 and 5 years after out planting. Appl. Soil Ecol. 10:117-126.
  3. Ingham, E.R. and J.Barlow. (1998). Sustainable Agriculture and the Ecology of Soil Perspectives on Business and Global Change. 12:31-42.
  4. Ingham, E.R. (1998). Soil organisms and their role in healthy turf. Turf Grass Trends. 7:1-6.
  5. Holmes, M. and E.R. Ingham. (1999) Ecological effects of genetically engineered Klebsiella planticola released into agricultural soil with varying clay content. Appl. Soil Ecol. 11:67-78.
  6. Wilson, M.V. and E.R. Ingham. (1999). Mycorrhizal requirements of six wetlands herbaceous plant species. Mycorrhiza.
  7. Ingham, E.R, Seiter, S., and R.D. William. (1999). Dynamics of soil fungal and bacterial biomass in a temperate climate alley cropping system. Appl. Soil Ecol. 12: 39-147.
  8. Doyle, J.D., Hendricks, C.W., Holmes, M.T., and E.R. Ingham. (1999). Effects of Klebsiella planticola SDF20 on soil biota and wheat growth in sandy soil. Appl. Soil Ecol. 11: 67-78.
  9. Ingham, E. R. (1999).  The Soil Biology Primer  - Chapter 1.  The Soil Foodweb.  NRCS Soil Quality Insitute, USDA. 48 pp. 
  10. Ingham, E.R. (1999). The Soil Biology Primer Chapter 2.  Soil Bacteria. NRCS Soil Quality Institute, USDA.
  11. Ingham, E.R. (1999). The Soil Biology Primer – Chapter 3. Soil Fungi. NRCS Soil Quality Institute. USDA.
  12. Ingham, E.R. (1999). The Soil Biology Primer – Chapter 4. Soil Protozoa. NRCS Soil Quality Institute. USDA.
  13. Ingham, E.R. (1999). The Soil Biology Primer – Chapter 5. Soil Nematodes. NRCS Soil Quality Institute. USDA.
  14. Ingham, E.R. (2000) The Compost Tea Brewing Manual.  Sustainable Studies Institute, Eugene, OR.  60 pp.

    57.  Tunnick, Michael H., Paul, Moushumi, Ingham, Elaine R., Karreman, Hubert J., and Van Hekken, Diane L. (2015) Differences in milk characteristics between a cow herd transitioning to organic versus milk from a conventional dairy herd. International Journal of Dairy technology, 8 pp.


Book Chapters

  1. Ingham, E.R. and R. Molina. 1991. Interactions between mycorrhizal fungi, rhizosphere organisms, and plants. Pages 169-197 in Microorganisms, Plants and Herbivores, P. Barbosa (ed). John Wiley and Sons, NY.
  2. Ingham, E.R. and R. Molina. 1991. Interactions between mycorrhizal fungi, rhizosphere organisms, and plants. Pages 169-197 in Microorganisms, Plants and Herbivores, P. Barbosa (ed). John Wiley and Sons, NY.
  3. Ingham, E.R. 1994. Soil Protozoa. Agronomy Society of America. In Methods in Agronomy, P. Bottomley (ed). Agronomy Soc. Am.
  4. Ingham, E.R. and A. Moldenke. 1995. Microflora and Microfauna on Stems and Trunks: Diversity, Food Webs and Effects on Plants. pp. 241-256. IN Gartner, B. Plant Stems. Academic Press. NY.
  5. Ingham, E.R. (1997). Soil Microbiology. pp. XX-XX. IN Sylvia, D. and Hartel, P. Soil Microbiology:Environmental and Agricultural Perspectives. Oxford University Press.
  6. Ingham, E.R. and M. Alms.  1999.  The Compost Tea Handbook 1.1


Refereed Reports

  1. Wilson, M.V., E.R. Ingham, C.D. McIntire and M.L. Scott. 1988. Report on the selection of several potentially critical terrestrial systems. USEPA.
  2. Ingham, E.R., M.V. Wilson and C.D. McIntire. 1989. A general model of biotic interactions. Special Report to the USEPA, CR-813570-01-0, 36 pp.
  3. Thies, W.G., M.A. Castellano, E.R. Ingham, D.L. Luoma and A.R. Moldenke. 1991. Bioresponse of nontarget organisms resulting from the use of chloropicrin to control laminated root rot in a northwest Conifer forest.
  4. Ingham, E.R., W.G. Thies, D.L. Luoma, A.R. Moldenke and M.A. Castellano. 1991. Bioresponse of nontarget organisms resulting from the use of chloropicrin to control laminated root rot in a northwest Conifer forest.
  5. Linder, G., E.R. Ingham, C.J. Brandt and G. Henderson. 1992. Evaluation of terrestrial indicators for use in ecological assessments at hazardous waste sites. USEPA/600/r-92/183.
  6. Ingham, E.R. 1993. Use of soil foodweb structure and function to assess superfund sites. USEPA Ecological Site Assessment Program. Corvallis Environmental Research Lab.
  7. Ingham, E.R. 1995. Standard Operating Procedure for Microbial Population Dynamics. USEPA Global Climate Change Program. Corvallis Environmental Research Lab.
  8. Ingham, E.R. 1994. Standard Operating Procedure for Total Bacteria. USEPA Global Climate Change Program. Corvallis Environmental Research Lab.
  9. Ingham, E.R. 1995. Standard Operating Procedure for Nematode Population and Community Structure. USEPA Global Climate Change Program. Corvallis Environmental Research Lab.
  10. Ingham, E.R. 1995. Standard Operating Procedure for Protozoan Populations and Community Structure. USEPA Global Climate Change Program. Corvallis Environmental Research Lab. 

 


Technical Reports (Not Refereed)

Ingham, E.R. and M. Holmes. 1995. Biosafety Regulations: A critique of existing documents.

The Edmonds Institute, Edmonds, WA. Ingham, E.R. 1995. Biosafety Regulation. Edmonds Institute, Edmonds, WA.

Monthly Column in Biocycle

Monthly column including discussions of: Anaerobic Bacteria and Composting, The Good, the Bag and Facultative Anaerobes, What Organisms are in Compost?, What is Compost Tea?, Methyl Bromide Alternatives, Fungi and Disease-Suppression, Vermicompost versus Compost - What's the Difference/

Numerous other magazine and newspaper publications since 1999.

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